Otto-von-Guericke-Universität Magdeburg

Institute of Experimental Internal Medicine
 
 
 
 
 
 
 
 
 
 
 
 
publications
 

Publications

 

in press 2019  2018 2017  2016  2015  2014  2013  2012  2011  2010   

in press

Cristóbal Gómez, Mauricio Sandoval, Juan Pablo Ramírez, Roberto Henzi, Manuel Varas-Godoy, Alejandro Luarte, Alejandra Lopez-Verrilli, Anllely Fernández, Karl-Heinz Smalla, Thilo Kaehne, Ursula Wyneken. 2018. Small extracellular vesicles in rat serum contain astrocyte-derived protein biomarkers of repetitive stress. Int J Neuropsychopharmacol. IF: 3,981

Muñoz RI, T Kähne, H Herrera, S Rodríguez, M Montserrat Guerra, K Vío, R Hennig, E Rapp, E Rodríguez. 2018. The subcommissural organ and the Reissner fiber: old friends revisited. Cell Tissue Res. IF: 3,043

Sokolova O, M Naumann. 2018. Crosstalk between DNA damage and inflammation in the multiple steps of gastric carcinogenesis. Curr Topics Microbiol Immunol. IF: 4,427

 

Publications 2019

Maubach G, M  Feige, M  Lim, M Naumann. 2018. NF-kappaB‑inducing kinase in cancer. Biochim Biophys Acta Rev Cancer. 1871:40-49. IF: 8,860

 

Publications 2018

Dash BP, TM Schnöder, C Kathner, J Mohr, S Weinert, C Herzog, PS Godavarthy, C Zanetti, F Perner, R Braun-Dullaeus, B Hartleben, TB Huber, G Walz, M Naumann, S Ellis, V Vasiokhin, T Kähne, DS Krause, FH Heidel. 2018. Diverging impact of cell fate determinants Scrib and Llgl1 on adhesion and migration of hematopoietic stem cells. J Cancer Res Clin Oncol 144:1933-1944. IF: 3,282

Dubiel W, D Dubiel, DA Wolf, M Naumann. 2018. Cullin 3-based ubiquitin ligases as master regulators of mammalian cell differentiation. Trends Biochem Sci. 43:95-107. IF: 15,678

Feige M, O Sokolova, A Pickenhahn, G Maubach, M Naumann. 2018. HopQ impacts the integrin α5β1-independent NF-κB activation by Helicobacter pylori in CEACAM expressing cells. Int J Med Microbiol. 308:247-533. IF: 3,298

Feige MH, M Vieth, O Sokolova, C Täger, M Naumann. 2018. Helicobacter pylori induces direct activation of the lymphotoxin beta receptor and non-canonical nuclear factor-kappa B signaling. Biochim Biophys Acta. 1865:545-550. IF: 4,651

Fischer T, RC Braun-Dullaeus, M Naumann, J Kekow, PR Mertens, J Schreiber, A Canbay. 2018. Das internistische Jahr 2017 – Die wichtigsten Fortschritte und Entwicklungen. Ärzteblatt Sachsen-Anhalt. 29:17-20. IF: /

Gantenbein N, E Bernhart, I Anders, N Golob-Schwarzl, S Krassnig, C Wodlej, L Brcic, I Lindenmann, N Fink-Neuboeck, F Gollowitsch, E Stacher-Priehse, M Asslaber, M Gogg-Kamerer, J Rolff, J Hoffmann, A Silverstri, C Regenbrecht, C Reinhard, AM Pehserl, M Pichler, O Sokolova, M Naumann, V Mitterer, B Pertschy, H Bergler, H Popper, W Sattler, J Haybaeck. 2018. Influence of eukaryotic translation initiation factor 6 on non-small cell lung cancer development and progression. Eur J Cancer. 101:165-180. IF: 7,191

Kumar V, M Naumann, M Stein. 2018. Computational Studies on the Inhibitor Selectivity of Human JAMM Deubiquitinylases Rpn11 and CSN5. Front Chem 6:480. IF: 4,155

Lim M, G Maubach, M Naumann. 2018. NF‑kB‑regulated ubiquitin-editing enzyme A20 paves the way for infection persistency. Cell Cycle. 17:3-4. IF: 3,304

Maubach G, AC Schmädicke, M Naumann. 2018. Nuclear factor-κB to human diseases. Trends Mol Med. 24:654 [Erratum for Trends Mol Med. 2017]

Michels B, H Zwaka, R Bartels, O Lushchak, K Franke, T Endres, M Fendt, I Song, M Bakr, T Budragchaa, B Westermann, D Mishra, C Eschbach, S Schreyer, A Lingnau, C Vahl, M Hilker, R Menzel, T Kähne, V Leßmann, A Dityatev, L Wessjohann, B Gerber. 2018. Memory enhancement by ferulic acid ester across species. Sci. Adv. 4:eaat6994. IF: 11,511

Mohr J, BP Dash, TM Schnoeder, D Wolleschak, C Herzog, NT Santamaria, S Weinert, S Godavarthy, C  Zanetti, M Naumann, B Hartleben, TB Huber, DS Krause, T Kähne, L Bullinger, FH Heidel. 2018. The cell fate determinant Scribble is required for maintenance of hematopoietic stem cell function. Leukemia. 32:1211-1221. IF: 10,023

Naghavi L, M Schwalbe, A Ghanem, M Naumann. 2018. Deubiquitinylase USP47 promotes RelA phosphorylation and survival in gastric cancer cells. Biomedicines. 6:E62. IF: /

Pischel D, JH Buchbinder, K Sundmacher, IN Lavrik, RJ Flassig. 2018. A guide to automated apoptosis detection: How to make sense of imaging flow cytometry data. PLoS One. 13:e0197208. IF: 3,54

Prokhorova EA, GS Kopeina, IN Lavrik, B Zhivotovsky. 2018. Apoptosis regulation by subcellular relocation of caspases. Sci Rep. 8:2199. IF: 4,122

Saik OV, PS Demenkov, TV Ivanisenko, EY Bragina, MB Freidin, IA Goncharova, VE Dosenko, OI Zolotareva, R Hofestaedt, IN Lavrik, EI Rogaev, VA Ivanisenko. 2018. Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks. BMC Med Genomics.11:15. IF: 3,317

Senichkin VV, GS Kopeina, EA Prokhorova, AV Zamaraev, IN Lavrik, B Zhivotosky. 2018. Modulation of Mcl-1 transcription by serum deprivation sensitizes cancer cells to cisplatin. Biochim Biophys Acta. 1862:557-566. IF: 3,679

Sokolova O, T Kähne, K Bryan, M Naumann. 2018. Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37. Oncotarget. 9:14366-14381. IF: 5,168

Studencka-Turski M, G Maubach, MH Feige, M Naumann. 2018. Constitutive activation of nuclear factor kappa B-inducing kinase counteracts apoptosis in cells with rearranged mixed lineage leukemia gene. Leukemia. IF: 10,023

Zamaraev AV, GS Kopeina, JH Buchbinder, B Zhivotovsky, IN Lavrik. 2018. Caspase-2 is a negative regulator of necroptosis. Int J Biochem Cell Biol. 102:101-108. IF: 3,247

 

Publications 2017

Backert S, R Haas, M Gerhard, M Naumann. 2017. The Helicobacter pylori type IV secretion system encoded by the cag pathogenicity island: architecture, function and signaling. Curr Topics Microbiol Immunol. 413:187-220. IF: 3,719

Bettermann K. 2017. NF-κB and its implication in liver health and cancer development. Mech Mol Carcino. 1:87-114. IF: /

Boege Y, M Malehmir, ME Healy, K Bettermann, A Lorentzen, M Vucur, AK Ahuja, F Böhm, J Mertens, Y Shimizu, L Frick, C Remouchamps, K Mutreja, T Kähne, D Sundaravinayagam, M Wolf, H Rehrauer, C Koppe, T Speicher, S Padrissa-Altés, R Maire, JM Schattenberg, J Jeong, L Liu, S Zwirner, R Boger, N Hüser, RJ Davis, B Müllhaupt, H Moch, H Schulze-Bergkamen, PA Clavien, S Werner, L Borsig, SA Luther, P Jost, R Weinlich, K Unger, A Behrens, L Hillert, C Dillon,, M Di Virgilio, D Wallach, E Dejardin, L Zender, M Naumann, H Walczak, DR Green, M Lopes, I Lavrik, T Luedde, M Heikenwalder, A Weber. 2017. A dual role of caspase 8 in triggering and sensing proliferation-associated DNA damage, a key determinant of liver cancer development. Cancer Cell. 32:342-359e10. IF: 27,407

Caviedes A, M Varas-Godoy, CA Lafourcade, S Sandoval, JB Bravo-Alegria, T Kaehne, AG Massmann, JP Figueroa, FJ Nualart, U Wyneken. 2017. Endothelial nitric oxide synthase is present in dendritic spines of neurons in primary cultures. Front Cell Neurosci. 11:180. IF: 4,555

Dubiel D, W Bintig, T Kähne, W Dubiel, M Naumann. 2017. Cul3 neddylation is crucial for gradual lipid droplet formation during adipogenesis. Biochim Biophys Acta. 1864:1405-1412. IF: 4,521

Fernández-Orth J, P Ehling, T Ruck, S Pankratz, MS Hofmann, P Landgraf, DC Dieterich, KH Smalla, T Kähne, G Seebohm, T Budde, H Wiendl, S Bittner, SG Meuth. 2017. 14-3-3 proteins regulate K2P 5.1 surface expression on T lymphocytes. Traffic. 18:29-43. IF: 4,133

Figueiredo AS. 2017. Data sharing: Convert challenges into opportunities. Front Public Health. 5:327. IF: /

Figueiredo AS, T Kouril, D Esser, P Haferkamp, P Wieloch, D Schomburg, P Ruoff, B Siebers, J Schaber. 2017. Systems biology of the modified branched Entner-Doudoroff pathway in Sulfolobus solfataricus. PLoS One. 12:e180331. IF: 2,806

Haurat MF, AS Figueiredo, L Hoffmann, L Li, K Herr, A Wilson, M Beeby, J Schaber, SV Albers. 2017. ArnS, a kinase involved in starvation-induced archaellum expression. Mol Microbiol. 103:181-194. IF: 3,898

Korthals M, K Langnaese, KH Smalla, T Kähne, R Herrera-Molina, J Handschuh, AC Lehmann, D Mamula, M Naumann, C Seidenbecher, W Zuschratter, K Tedford, ED Gundelfinger, D Montag, KD Fischer, U Thomas. 2017. A complex of neuroplastin and plasma membrane Ca2+ ATPase controls T cell activation. Sci Rep. 7:8358. IF: 4,259

Lim M, G Maubach, O Sokolova, MH Feige, R Diezko, J Buchbinder, S Backert, D Schlüter, IN Lavrik, M Naumann. 2017. Pathogen-induced ubiquitin-editing enzyme A20 bifunctionally shuts off NF-kB and caspase 8-dependent apoptotic cell death. Cell Death Differ. 24:1621-1631. IF: 8,339

Maubach G, M Naumann. 2017. NEMO links NF‑kB to human diseases. Trends Mol Med. 23:1138-1155. IF: 10.732

Mertens PR, RC Braun-Dullaeus, J Schreiber, A Canbay, M Naumann, T Fischer, J Kekow. 2017. Das internistische Jahr 2016 – Die wichtigsten Fortschritte und Entwicklungen. Ärzteblatt Sachsen-Anhalt. 28:19-22. IF: /

Naumann M, O Sokolova, N Tegtmeyer, S Backert. 2017. Helicobacter pylori: a paradigm pathogen for subverting host cell signal transmission. Trends Microbiol. 25:316-328. IF: 11,020

Petrovskaya CV, ED Petrovskiy, IN Lavrik, VA Ivanisenko. 2017. A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks. J Bioinform Comput Biol. 15:16550-16545. IF: 0,800

Pietkiewicz S, C Wolfe, JH Buchbinder, IN Lavrik. 2017. Measuring procaspase-8 and -10 processing upon apoptosis induction. Bio Protoc. 7:e2081. IF: /

Ranjan S, A Goihl, S Kohli, I Gadi, M Pierau, K Shahzad, D Gupta, F Bock, H Wang, H Shaikh, T Kähne, D Reinhold, U Bank, A Zenclussen, J Niemz, T Schnöder, M Brunner-Weinzierl, T Fischer, T Kalinski, B Schraven, T Luft, J Huehn, M Naumann, F Heidel, B Isermann. 2017. Activated protein C protects from GvHD via PAR2/PAR3 signalling in regulatory T-cells. Nat Commun. 8:311. IF: 12,124

Saik OV, NA Konovalova, PS Demenkov, NV Ivanisenko, T V Ivanisenko, DE Ivanoshchuk, O S Konovalova, OA Podkolodnaya, IN Lavrik, NA Kolchanov, VA Ivanisenko. 2017. Molecular mechanisms of the interaction between the processes of the cell response to mechanical stress and neuronal apoptosis in primary open-angle glaucoma. Russ J Genet. 7:558-564. IF: /

Schmid U, W Stenzel, J Koschel, M Raptaki, X Wang, M Naumann, K Matuschewski, D Schlüter, G Nishanth. 2017. The deubiquitinating enzyme cylindromatosis dampens CD8+ T cell responses and is a critical factor for experimental cerebral malaria and blood-brain barrier damage. Front Immunol. 8. IF: 6,429

Sokolova O, M Naumann. 2017. NF-κB signaling in gastric cancer. Toxins. 9:119. IF: 3,030

Studencka M, J Schaber. 2017. Senoptosis: non-lethal DNA cleavage as a route to deep senescence. Oncotarget. 8:30656-30671. IF: 5,168                       

Tegtmeyer N, S Wessler, V Necchi, M Rohde, A Harrer, TT Rau, CI Asche, M Boehm, H Loessner, C Figueiredo, M Naumann, R Palmisano, E Solcia, V Ricci, S Backert. 2017. Helicobacter pylori employs a unique basolateral type IV secretion mechanism for CagA delivery. Cell Host Microbe. 22:552-560. IF: 14,946

Yazdi S, M Naumann, M Stein. 2017. Double phosphorylation-induced structural changes in the signal-receiving domain of IκBα in complex with NF-κB. Proteins. 85:17-29. IF: 2,289

Zamaraev AV, GS Kopeina, EA Prokhorova, B Zhivotovsky, IN Lavrik. 2017. Post-translational modification of caspases: the other side of apoptosis regulation. Trends Cell Biol. 75:322-339. IF: 15,333

Zimmermann S, L Pfannkuch, MA Al-Zeer, S Bartfeld, M Koch, J Liu, C Rechner, M Soerensen, O Sokolova, A Zamyatina, P Kosma, AP Mäurer, F Glowinski, KP Pleissner, M Schmid1, V Brinkmann, M Naumann, M Rother, N Machuy, TF Meyer. 2017. ALPK1 and TIFA dependent innate immune response triggered by the Helicobacter pylori type IV secretion system. Cell Rep. 20:2384-2395. IF: 8,282

 

Publications 2016

Aksenova VI, GS Kopeina, Av Zamaraev, BD Zhivotovskiy, IN Lavrik. 2016. Mechanism of caspase-2 activation upon DNA damage. Dokl Biochem Biophys. 467.132-135. IF: 0,394

Backert S, M Neddermann, G Maubach, M Naumann. 2016. Pathogenesis of Helicobacter pylori infection. Helicobacter. 21 Suppl 1:19-25. IF: 3,920

Börsch A, J Schaber. 2016. How time delay and network design shape response patterns in biochemical negative feedback systems. BMC Syst Biol.10:82. IF: 2,213

Braun-Dullaeus RC, PR Mertens, J Schreiber, P Malfertheiner, M Naumann, T Fischer, J Kekow. 2016. Das internistische Jahr 2015 – die wichtigsten Fortschritte und Entwicklungen. Ärzteblatt Sachsen-Anhalt. 27:19-22. IF: /

Figueiredo AS, A Schumacher. 2016. The T helper type 17/regulatory T cell paradigm in pregnancy. Immunology. 148:13-21. IF: 4,078

Gummlich L, T Kähne, M Naumann, E Kilic, K Jung, W Dubiel. 2016. New insights into the mechanism of COP9 signalosome Cullin-RING Ubiquitin-Ligase pathway deregulation in urological cancers. Int Rev Cell Mol Biol. 323:181-229. IF: 3,752

Ivanisenko NV, L Hillert, VA Ivanisenko, IN Lavrik. 2016. Design and experimental validation of small-molecule inhibitors of the FADD protein. RUSS J GENET+.6:778-784. IF: 0,448

Ivanisenko NV, IN Lavrik, VA Ivanisenko. 2016. Computer simulation of the spatial structures of MUC1 peptides capable of inhibiting apoptosis. RUSS J GENET+.6:771-777. IF: 0,448

Just S, G Nishanth, J Buchbinder, X Wang, M Naumann, I Lavrik, D Schlüter. 2016. A20 curtails primary but augments secondary CD8+ T cell responses in intracellular bacterial infection. Sci Rep. 6:39796. IF: 5,228

Kähne T, S Richter, A Kolodziej, KH Smalla, R Pielot, A Engler, FW Ohl, DC Dieterich, C Seidenbecher, W Tischmeyer, M Naumann, ED Gundelfinger. 2016. Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain. J Neurochem. 138:124-138. IF: 3,842

Kasiri MM, L Beer, L Nemec, F Gruber, S Pietkiewicz, T Haider, EM Simader, D Traxler, T Schweiger, S Janik, S Taghavi, C Gabriel, M Mildner, HJ Ankersmit. 2016. Dying blood mononuclear cell secretome exerts antimicrobial activity. Eur J Clin Invest. 46:853-863. IF:2,687

Kleber J, YC Chen, B Michels, T Saumweber, M Schleyer, T Kähne, E Buchner, B Gerber. 2016. Synapsin is required to "boost" memory strength for highly salient events. Learn Mem. 23:9-20. IF: 2,906

Kollarovic G, M Studencka, L Ivanova, C Lauenstein, K Heinze, A Lapytsko, SR Talemi, AS Figueiredo, J Schaber. 2016. To senesce or not to senesce: how primary human fibroblasts decide their cell fate after DNA damage. Aging. 8:158-177. IF: 3,979

Kolodziej A, KH Smalla, S Richter, A Engler, R Pielot, D Dieterich, W Tischmeyer, M Naumann, T Kähne. 2016. High resolution quantitative synaptic proteome profiling of mouse brain regions after auditory discrimination learning. J Vis Exp. 118:e54992. IF: 1,113

Kopeina GS, AV Zamaraev, BD Zhivotovsky, IN Lavrik. 2016. Identification of new complex for caspase-2 activation after DNA damage. Russ J Bioorganic Chem. 42:74-82. IF: 0,660

Lange M, J Schaber, A Marx, G Jäckel, FW Badeck, R Seppelt, D Doktor. 2016. Simulation of forest tree species` bud burst dates for different climate scenarios: chilling requirements and photo-period may limit bud burst advancement. Int J Biometeorol. 60:1711-1726. IF: 2,309

Lapytsko A, J Schaber. 2016. The role of time delay in adaptive cellular negative feedback systems. J Theor Biol. 398:64-73 IF: 2,049

Lavrik IN, MG Samsonaova. 2016. The systems biology of signaling pathways. Biophysics. 61:78-84. IF: /

Möhle L, N Israel, K Paarmann, M Krohn, S Pietkiewicz, A Müller, IN Lavrik, JS Buguliskis, BH Schott, D Schlüter, ED Gundelfinger, D Montag, U Seifert, J Pahnke, IR Dunay. 2016. Chronic Toxoplasma gondii infection enhances β-amyloid phagocytosis and clearance by recruited monocytes. Acta Neuropathol Commun. 4:25. IF: /

Oh IS, K Textoris-Taube, PS Sung, W Kang, X Gorny, T Kähne, SH Hong, YJ Choi, C Cammann, M Naumann, JH Kim, SH Park, OJ Yoo, PM Kloetzel, U Seifert, EC Shin. 2016. Immunoproteasome induction is suppressed in hepatitis C virus-infected cells in a protein kinase R-dependent manner. Exp Mol Med. 48:e270. IF: 5,164

Popik OV, TV Ivanisenko, OV Saik, ED Petrovskiy, IN Lavrik, VA Ivanisenko. 2016. NACE: A web-based tool for prediction of intercompartmental efficiency of human molecular genetic networks. Virus Res. 218:79-85. IF: 2,526

Popik OV, ED Petrovskiy, EL Mishchenko, IN Lavrik, VA Ivanisenko. 2016. Mosaic gene network modelling identified new regulatory mechanisms in HCV infection. Virus Res. 218:71-78. IF: 2,526

Schleich K, JH Buchbinder, S Pietkiewicz, T Kähne, U Warnken, S Öztürk, M Schnölzer, M Naumann, PH Krammer, IN Lavrik. 2016. Molecular architecture of the DED chains at the DISC: Regulation of procaspase-8 activation by short DED proteins c-FLIP and procaspase-8 prodomain. Cell Death Differ. 23:681-694. IF: 8,218

Schweitzer K, A Pralow, M Naumann. 2016. P97/VCP promotes cullin-RING-ubiquitin-ligase/proteasome-dependent degradation of IκBa and the preceding liberation of RelA from ubiquitinated IκBa. J Cell Mol Med. 20:58-70. IF: 4,938

Senichkin VV, GS Kopeina, AV Zamaraev, IN Lavrik, BD Zhivotovsky. 2016. Nutrient restriction in combinatory therapy of tumors. Mol Biol (Mosk).50:362-378. IF: 0,612

Talemi SR, CF Tiger, M Andersson, R Babazadeh, N Welkenhuysen, E Klipp, S Hohmann, J Schaber. 2016. Systems level analysis oft he yeast osmo-stat. Sci Rep. 6:30950. IF: 5,228

Wex K, U Schmid, S Just, X Wang, R Wurm, M Naumann, D Schlüter, G Nishanth. 2016. Receptor-interacting protein kinase-2 inhibition by CYLD impairs antibacterial immune responses in macrophages. Front Immunol. 6:00650. IF: 5,695

Zimmer C, K Schleich, I Lavrik. 2016. Parameter identification using stochastic simulations reveals a robustness in CD95 apoptotic response. Mol Biosyst. 12:1486-1495 IF: 2,829

 

Publications 2015

Boehme JD, S Pietkiewicz, I Lavrik, A Jeron, D Bruder. 2015. Morphological and functional alterations of alveolar macrophages in a murine model of chronic inflammatory lung disease. Lung. 193:947-953. IF: 2,271

Dorosz S, A Ginolhac, T Kähne, M Naumann, T Sauter, A Salsmann, JL Bueb. 2015. Role of calprotectin as a modulator of the IL-27-mediated pro-inflammatory effect on endothelial cells. Mediators Inflamm. 2015: ID 737310, 16 pages. IF: 3,236

Dubiel D, J Ordemann, J Pratschke, W Dubiel, M Naumann. 2015. CAND1 exchange factor promotes Keap1 integration into cullin 3-RING ubiquitin ligase during adipogenesis. Int J Biochem Cell Biol. 66:95-100. IF: 4,046

Dubiel D, B Rockel, M Naumann, W Dubiel. 2015. Diversity of COP9 signalosome structures and functional consequences. FEBS Lett. 589:2507-2513. IF: 3,169

Lapytsko A, G Kollarovic, L Ivanova, M Studencka, J Schaber. 2015. FoCo: a simple and robust quantification algorithm of nuclear foci. BMC Bioinformatics. 16:392 IF: 2,576

Medunjanin S, JM Daniel, S Weinert, J Dutzmann, F Burgbacher, S Brecht, D Bruemmer, T Kähne, M Naumann, DG Sedding, W Zuschratter, RC Braun-Dullaeus. 2015. DNA-dependent protein kinase (DNA-PK) permits vascular smooth muscle cell proliferation through phosphorylation of the orphan nuclear receptor NOR1. Cardiovasc Res. 106:488-497. IF: 5,940

Mkrtchyan G, V Aleshin, Y Parkhomenko, T Kähne, ML di Salvo, A Parroni, R Contestabile, A Vovk, L Bettendorff, V Bunik. 2015. Molecular mechanisms of the non-coenzyme action of thiamin in brain: biochemical, structural and pathway analysis. Sci Rep. 5:12583. IF: 5,578

Niewalda T, B Michels, R Jungnickel, S Diegelmann, J Kleber, T Kähne, B Gerber. 2015. Synapsin determines memory strength after punishment- and relief-learning. J Neurosci. 35:7487-7502. IF: 6,344

Petrovskiy ED, OV Saik, ES Tiys, IN Lavrik, NA Kolchanov, VA Ivanisenko. 2015. Prediction of tissue-specific effects of gene knockout on apoptosis in different anatomical structures of human brain. BMC Genomics. 16 Suppl 13:S3 IF: 3,986

Pietkiewicz S, R Eils, PH Krammer, N Giese, IN Lavrik. 2015. Combinatorial treatment of CD95L and gemcitabine in pancreatic Cancer cells induces apoptotic and RIP1-mediated necroptotic cell death network. Exp Cell Res. 339:1-9. IF: 3,246

Pietkiewicz S, JH Schmidt JH, IN Lavrik. 2015. Quantification of apoptosis and necroptosis at the single cell level by a combination of Imaging Flow Cytometry with classical Annexin V/propidium iodide staining. J Immunol Methods. 423:99-103. IF: 1,820

Prokhorova EA, AV Zamaraev, GS Kopeina, B Zhivotovsky, IN Lavrik. 2015. Role of the nucleus in apoptosis: signaling and execution. Cell Mol Life Sci. 72:4593-4612. IF: 5,808

Rastgou Talemi S, G Kollarovic, A Lapytsko, J Schaber. 2015. Development of a robust DNA damage model including persistent telomere-associated damage with application to secondary cancer risk assessment. Sci Rep. 5:13540. IF: 5,578

Reichenbach N, U Herrmann, T Kähne, H Schicknick, R Pielot, M Naumann, DC Dieterich, ED Gundelfinger, KH Smalla, W Tischmeyer. 2015. Differential effects of dopamine signalling on long-term memory formation and consolidation in rodent brain. Proteome Sci. 13:13. IF: 1,725

Schmidt JH, S Pietkiewicz, M Naumann, IN Lavrik. 2015. Quantification of CD95-induced apoptosis and NF-κB activation at the single cell level. J Immunol Methods. 423:12-17. IF: 1,820

Schweitzer K, M Naumann. 2015. CSN-associated USP48 confers stability to nuclear NF-kappaB/RelA by trimming K48-linked Ub-chains. Biochim Biophys Acta. 1853:453-469. IF: 5,019

Wurm R, S Just, X Wang, K Wex, U Schmid, N Blanchard, A Waisman, HJ Schild, M Naumann, D Schlüter, G Nishanth. 2015. Protective dendritic cell responses against listeriosis induced by the short form of the deubiquitinating enzyme CYLD are inhibited by full-length CYLD. Eur J Immunol. 45:1366-1376. IF: 4,034

Xuan NT, X Wang, G Nishanth, A Waisman, K Borucki, B Isermann, M Naumann, M Deckert, D Schlüter. 2015. A20 expression in dendritic cells protects against LPS-induced mortality. Eur J Immunol. 45:818-828. IF: 4,034

Yazdi S, S Durdagi, M Naumann, M Stein. 2015. Structural modeling of the N-terminal signal–receiving domain of IκBα. Front Mol Biosci. 2:32 IF: -,-

Zamaraev AV, GS Kopeina, B Zhivotovsky, IN Lavrik. 2015. Cell death controlling complexes and their potential therapeutic role. Cell Mol Life Sci. 72:505-517. IF: 5,808

 

Publications 2014

Bettermann K, T Hohensee, J Haybaeck. 2014. Steatosis and steatohepatitis: complex disorders. Int J Mol Sci. 15:9924-9944 IF: 2,339

Dieterle AM, P Böhler, H Keppeler, S Alers, N Berleth, S Drießen, N Hieke, S Pietkiewicz, AS Löffler, C Peter, A Gray, NR Leslie, H Shinohara, T Kurosaki, M Engelke, J Wienands, M Bonin, S Wesselborg, B Stork. 2014. PDK1 controls upstream PI3K expression and PIP3 generation. Oncogene. 5:33:3043-3053. IF: 8,559

Flassig R, G Maubach, C Täger, K Sundmacher, M Naumann. 2014. Experimental design, validation and computational modeling uncover DNA damage sensing by DNA-PK and ATM. Mol. Biosyst. 10:1978-1986. IF: 3,183

Lavrik IN. 2014. Systems biology of death receptor networks: live and let die. Cell Death Dis. 5:e1259. IF: 5,177

Lavrik IN, B Zhivotovsky. 2014. Systems biology: a way to make complex problems more understandable. Cell Death Dis. 5:e1259. 5,177

Popik OV, OV Saik, ED Petrovskiy, B Sommer, R Hofestädt, IN Lavrik, VA Ivanisenko. 2014. Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics. 15 Suppl 12:S7. IF: 4,041

Rastgou Talemi S, T Jacobson, V Garla, C Navarrete, A Wagner, MJ Tamás, J Schaber. 2014. Mathematical modeling of arsenic transport, distribution and detoxification processes in yeast. Mol Microbiol. 92:1343-1356. IF: 5,026

Schaber J, A Lapytsko, D Flockerzi. 2014. Nested autoinhibitory feedbacks alter the resistance of homeostatic adaptive biochemical networks. J R Soc Interface. 11:20130971. IF: 3,856

Sokolova O, G Maubach, M Naumann. 2014. MEKK3 and TAK1 synergize to activate IKK complex in Helicobacter pylori infection. Biochim Biophys Acta. 1843:715-724. IF: 5,297

Sokolova O, M Vieth, Gnad T, Bozko PM, Naumann M. 2014. Helicobacter pylori promotes eukaryotic protein translation by activating phosphatidylinositol 3 kinase/mTOR. Int J Biochem Cell Biol. 55C:157-163. IF: 4,240

 

Publications 2013

Dierenbach J, FW Badeck, J Schaber. 2013. The plant phenological online database (PPODB): an online database for long-term phenological data. Int J Biometeorol. 57:805-812. IF: 2,590

Diesing AK, C Nossol, H Faber-Zuschratter, W Zuschratter, L Renner, O Sokolova, M Naumann, HJ Rothkötter. 2013. Rapid interaction of Helicobacter pylori with microvilli of the polar human gastric epithelial cell line NCI-N87. Anat Rec. 296:1800-1805. IF: 1,343

Dubiel D, ME Gierisch, X Huang, W Dubiel, M Naumann. 2013. CAND1-dependent control of cullin 1-RING Ub ligases is essential for adipogenesis. Biochim Biophys Acta. 1833:1078-1084. IF: 4,808

Fricker N, IN Lavrik. 2013. Modeling Single Cells in Systems Biology. In: ‚Systems Biology of apoptosis’. Publ. Springer. p.145-162. IF: -,-

Kanakis D, U Lendeckel, P Theodosiou, H Dobrowolny, C Mawrin, G Keilhoff, A Bukowska, K Dietzmann, B Bogerts, HG Bernstein. 2013. ADAM 12: A putative marker of oligodendrogliomas? Dis Markers. 34:81-91. IF: 2,140

Karpova A, M Mikhaylova, S Bera, J Bär, PP Reddy, T Behnisch, V Rankovic, C Spilker, P Bethge, J  Sahin, R Kaushik, W Zuschratter, T Kähne, M Naumann, ED Gundelfinger, MR Kreutz. 2013. Encoding and transducing the synaptic or extrasynaptic origin of NMDA receptor signals to the nucleus. Cell. 152:1119-1133. IF: 31,957

Lavrik IN. 2013. book 'Systems biology of apoptosis'. Publ. Springer. 

Lee JH, L Yi, J Li, K Schweitzer, M Borgmann, M Naumann, H Wu. 2013. Crystal structure and versatile functional roles of the COP9-signalosome subunit 1. Proc Natl Acad Sci USA. 110:11845-11850. IF: 9,737

Maubach G, O Sokolova, M Wolfien, HJ Rothkötter, M Naumann. 2013. Ca2+/calmodulin-dependent kinase II contributes to inhibitor of nuclear factor-kappa B kinase complex activation in Helicobacter pylori infection. Int J Cancer. 133:1507-1512. IF: 6,198

Nishanth G, M Deckert, K Wex, R Massoumi, K Schweitzer, M Naumann, D Schlüter. 2013. CYLD enhances severe listeriosis by impairing IL-6/STAT3-dependent fibrin production. PLoS Pathog. 9:e1003455. IF: 8,136

Öztürk S, K Schleich, IN Lavrik. 2013. CASP8 (Caspase 8, Apoptosis-Related Cysteine Peptidase). Atlas Genet Cytogenet Oncol Haematol. 

Ortloff AR, K Vio, M Guerra, K Jaramillo, T Kaehne, H Jones, JP McAllister II, E Rodriguez. 2013. Role of the subcommissural organ in the pathogenesis of congenital hydrocephalus in the HTx rat. Cell Tissue Res. 352:707-725. IF: 3,677

Petelenz-Kurdziel E, C Kuehn, B Nordlander, D Klein, KK Hong, T Jacobson, P Dahl, J Schaber, J Nielsen, S Hohmann, E Klipp. 2013. Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress. PLoS Comput Biol. 9:e1003084. IF:4,867

Pietkiewicz S, D Sohn, RP Piekorz, S Grether-Beck, W Budach, K Sabapathy, RU Jänicke. 2013. Oppositional regulation of Noxa by JNK1 and JNK2 during apoptosis induced by proteasomal inhibitors. PLoS One. 8:e61438. IF: 3,730

Rickert D, N Fricker, IN Lavrik, FJ Theis. 2013. Systematic Complexity Reduction of Signaling Models and Application to a CD95 Signaling Model for Apoptosis. In: ‚Systems Biology of apoptosis’. Publ. Springer. p 57-84. IF: -,-

Schleich K, PH Krammer, IN Lavrik. 2013. The chains of death: A new view on caspase-8 activation at the DISC. Cell Cycle. 12:193-194. IF: 5,243

Schleich K, IN Lavrik. 2013. Mathematical modeling of apoptosis. Cell Commun Signaling. 11:44. IF: 5,039

Schleich K, IN Lavrik. 2013. Systems Biology of Death Receptor-Induced Apoptosis. In: ‚Systems Biology of apoptosis’. Publ. Springer. p.33-57. IF: -,-

Sokolova O, M Borgmann, C Rieke, K Schweitzer, HJ Rothkötter, M Naumann. 2013. Helicobacter pylori induces type 4 secretion system-dependent, but CagA-independent activation of IκBs and NF-κB/RelA at early time points. Int J Med Microbiol. 303:548-552. IF: 4,537

Sokolova O, M Vieth, M Naumann. 2013. Protein kinase C isozymes regulate matrix metalloproteinase-1 expression and cell invasion in Helicobacter pylori infection. Gut. 62:358-367. IF: 10,732

Walluscheck D, A Poehlmann, R Hartig, U Lendeckel, P Schönfeld, A Hotz-Wagenblatt, K Reissig, K Bajbouj, A Roessner, R Schneider-Stock. 2013. ATF2 knockdown reinforces oxidative stress-induced apoptosis in TE7 cancer cells. J Cell Mol Med. 17:976-988. IF: 4,753

Wang X, M Deckert, NT Xuan, G Nishanth, S Just, A Waisman, M Naumann, D Schlüter. 2013. Astrocytic A20 ameliorates experimental autoimmune encephalomyelitis by inhibiting NF-κB- and STAT1-dependent chemokine production in astrocytes. Acta Neuropathol. 126:711-724. IF: 9,734

Warnken U, K Schleich, M Schnölzer, IN Lavrik. 2013. Quantification of High-Molecular Weight Protein Platforms by AQUA Mass Spectrometry as Exemplified for the CD95 Death-Inducing Signaling Complex (DISC). Cells. 2: 476-495. IF: -,-

 

Publications 2012

Bien J, O Sokolova, P Bozko. 2012. Role of uropathogenic Escherichia coli virulence factors in development of urinary tract infection and kidney damage. Int J Nephrol 2012. 1-15. IF: -,-

Buss H, K Handschick, N Jurrmann, P Pekkonen, K Beuerlein, H Müller, R Wait, J Saklatvala, PM Ojala, ML Schmitz, M Naumann, M Kracht. 2012. Cyclin-dependent kinase 6 phosphorylates NF-κB p65 at serine 536 and contributes to the regulation of inflammatory gene expression. PLoS One. 7:e51847. IF: 4,092

Goihl A, AM Rolle, T Kähne, A Reinhold, S Wrenger, D Reinhold. 2012. Methodologic issues in the measurement of interleukin-16 in clinical blood samples using immunoassays. Cytokine 58:1-5. IF: 3,019

Kähne T, A Kolodziej, KH Smalla, E Eisenschmidt, UU Haus, R Weismantel, S Kropf, W Wetzel, F-W Ohl, W Tischmeyer, M Naumann, ED Gundelfinger. 2012. Synaptic proteome changes in mouse brain regions upon auditory discrimination learning. Proteomics. 12:2433-2444. IF: 4,505

Lavrik IN, PH Krammer. 2012. Regulation of CD95/Fas signaling at the DISC. Cell Death Differ. 1:36-41. IF: 8,371

Oztürk S, K Schleich, IN Lavrik. 2012. Cellular FLICE-like inhibitory proteins (c-FLIPs): fine-tuners of life and death decisions. Exp Cell Res. 318:1324-1331. IF: 3,580

Poltz R, M Naumann. 2012. Dynamics of p53 and NF-kappaB regulation in response to DNA damage and identification of target proteins suitable for therapeutic intervention. BMC Syst Biol 6:125. IF: 3,148

Sarto-Jackson I, I Milenkovic, KH Smalla, ED Gundelfinger, T Kaehne, R Herrera-Molina, S Thomas, MA Kiebler, W Sieghart. 2012. The cell adhesion molecule neuroplastin-65 is a novel interaction partner of γ-aminobutyric acid type A receptors. J Biol Chem. 287:14201-14214. IF: 4,773

Schaber J. 2012. Easy parameter identifiability analysis with COPASI. Biosystems. 110:183-185. IF: 1,784

Schaber J, R Baltanas, A Bush, E Klipp, A Colman-Lerner. 2012. Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast. Mol Syst Biol. 8:622. IF: 8,626

Schleich K, U Warnken, N Fricker, S Oztürk, P Richter, K Kammerer, M Schnölzer, PH Krammer, IN Lavrik. 2012. Stoichiometry of the CD95 Death-Inducing Signaling Complex: Experimental and Modeling Evidence for a Death Effector Domain Chain Model. Mol Cell. 47:306-319. IF: 14,178

Sewekow E, D Bimczok, T Kähne, H Faber-Zuschratter, LC Kessler, A Seidel-Morgenstern, HJ Rothkötter. 2012. The major soyabean allergen P34 resists proteolysis in vitro and is transported through intestinal epithelial cells by a caveolae-mediated mechanism. Br J Nutr 108:1603-1611. IF: 3,013

 

Publications 2011

Adrover MA, Z Zi, A Duch, J Schaber, A Gonzalez-Novo, J Jimenez, M Nadal-Robelles, J Clotet, E Klipp, F Rosas. 2011. Time-dependent quantitative multicomponent control of the G1-S network by the stress-activated protein kinase Hog1 upon osmostress. Science Sign 4, 192: ra63. IF: 6,354

Bechtloff R, A Goette, A Bukowska, C Wolke, T Kähne, B Peters, C Huth, U Lendeckel. 2009. Gender and age-dependent differences in the Bradykinin-metabolism within the pericardial fluid of patients with coronary artery disease. Int J Cardiol 146: 164-170. IF: 6,802

Bien J, O Sokolova, P Bozko. 2011. Characterization of Virulence Factors of Staphylococcus aureus: Novel Function of Known Virulence Factors That Are Implicated in Activation of Airway Epithelial Proinflammatory Response. J Pathog 2011: 601905. IF: -,-

Naumann M. 2011. Therapierelevante Forschung in der Inneren Medizin. Ärzteblatt Sachen-Anhalt 22: 25-26. IF: -,-

Neish AS, M Naumann. 2011. Microbial-induced immunomodulation by targeting the NF-kB system.  Trends Microbiol 19: 596-605. IF: 7,500

Maubach G, MC Lim, J Chen, H Yang, L Zhuo. 2011. miRNA studies in in vitro and in vivo activated hepatic stellate cells. World J Gastroenterol 17: 2748-2773. IF 2,240

Rieke C, A Papendieck, O Sokolova, M Naumann. 2011. Helicobacter pylori-induced tyrosine phosphorylation of IKKβ contributes to NF-κB activation. Biol Chem 392: 387-393. IF: 3,603

Sandoval R, A González, A Caviedes, F Pancetti, KH Smalla, T Kaehne, L Michea , E Gundelfinger, U Wyneken. 2011. Homeostatic NMDA receptor down-regulation via brain derived neurotrophic factor and nitric oxide-dependent signalling in cortical but not in hippocampal neurons. J Neurochem 118: 760-772. IF: 4,337

Schaber J, E Klipp. 2010. Model-based inference of biochemical parameters and dynamic properties of microbial signal transduction networks. Curr Opin Biotech 22: 109-116. IF: 8,486

Schaber J, M Flöttmann, J Li, CF Tiger, S Hohmann, E Klipp. 2011. Automated ensemble modeling with modelMaGe analyzing feedback mechanisms in the Sho1 branch of the HOG pathway. PLoS ONE 6: e14791. IF: 4,411

Tacke F, N Kanig, A En-Nia, T Kaehne, C Eberhardt, V Shpacovitch, C Trautwein, P Mertens. 2011. Y-box protein-1/p18 fragment identifies malignancies in patients with chronic liver disease. BMC Cancer 11: 185-204. IF: 3,153

Yu DM, L Slaitini, V Gysbers, AG Riekhoff, T Kähne, HM Knott, I De Meester, CA Abbott, GW McCaughan, MD Gorrell. 2011. Soluble CD26/dipeptidyl peptidase IV enhances human lymphocyte proliferation in vitro independent of dipeptidyl peptidase enzyme activity and adenosine deaminase binding. Scand J Immunol. 73: 102-111. IF: 1,935

 

Publications 2010

Backert S, M Naumann. 2010. What a disorder: proinflammatory signaling pathways induced by Helicobacter pylori. Trends Microbiol. 18: 479 - 486. IF: 6,894

Bukowska A, C Röcken, M Erxleben, FW Röhl, C Huth, MPA Ebert, U Lendeckel, A Goette. 2010. Atrial expression of endothelial nitric oxide synthase in patients with and without atrial fibrillation. Cardiovasc. Pathol. 19: e51 - e60. IF: 1,626

Cama G, T Jacobs, MI Dimaki, WE Svendsen, P Hauptmann, M Naumann. 2010. Disposable micro-fluidic biosensor array for online parallelized cell adhesion kinetics analysis on quartz crystal resonators. Meas. Sci. Technol. 21: 085801. IF: 1,317

Gnad T, M Feoktistova, M Leverkus, U Lendeckel, M Naumann. 2010. Helicobacter pylori-induced activation of β-catenin involves low density lipoprotein receptor-related protein 6 and Dishevelled. Mol. Cancer 9: 31. IF: 4,160

Mawrin C, C Wolke, D Haase, S Krüger, R Firsching, G Keilhoff, W Paulus, DH Gutmann, A Lal, U Lendeckel. 2010. Reduced activity of CD13/Aminopeptidase N (APN) in aggressive maningiomas is accociated with increased levels of SPARC. Brain Pathol. 20: 200-210. IF: 5,903

Mirastschijski U, R Schnabel, M Naumann, T Kähne. 2010. Novel plant metalloproteinase from Diffenbachia seguine caused fingertip necrosis. Br. J. Dermatol. 162: 1150-1152. IF: 4,260

Nishanth G, M Sakowicz-Burkiewicz, U Händel, S Kliche, X Wang, M Naumann, M Deckert, D Schlüter. 2010. Protective Toxoplasma gondii-specific T-cell responses require T-cell-specific expression of protein kinase C-theta. Infect Immun. 78: 3454-3464. IF: 4,205

Podhorecka M, A Skladanowski, P Bozko. 2010. H2AX Phosphorylation: its role in DNA damage response and cancer therapy. J. Nucleic Acids Aug 2010. pii: 920161. IF: -,-

Rieke C, T Kähne, K Schweitzer, B Schraven, J Wienands, M Engelke, M Naumann. 2010. Non-T cell activation linker regulates ERK activation in Helicobacter pylori-infected cells. Cell Signal. 22: 395-403. IF: 4,094

Rollié S, U Lendeckel, M Naumann, U Reichel, K Sundmacher. 2010. Dynamics of bionanoparticle targeting in mixtures of human tumour cells by validated population balance modelling. Soft Matter 6: 1203-1216. IF: 4,869

Schaber J, MA Adrover, E Eriksson, S Pelet, E Petelenz-Kurdziel, D Klein, F Posas, M Goksör, M Peter, S Hohmann, E Klip. 2010. Biophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activation. Eur Biophys J. 39: 1547-1556. IF: 2,437

Schmeding M, S Rademacher, S Boas-Knoop, C Roecken, U Lendeckel, P Neuhaus, UP Neumann. 2010. rHuEPo reduces Ischemia-Reperfusion injury and improves survival after transplantation of fatty livers in rats. Transplantation 89: 161-168. IF: 3,498

Schweitzer K, M Naumann. 2010. Control of NF-κB activation by the COP9 signalosome. Biochem Soc Trans. 38: 156-161. IF: 3,378

Schweitzer K, O Sokolova, PM Bozko, M Naumann. 2010. Helicobacter pylori induces NF-κB independent of CagA. EMBO Rep. 11: 10-11. IF: 6,907

Valero T, G Moshopoulou, S Kintzios, P Hauptmann, M Naumann, Jacobs T. 2010. Studies on neuronal differentiation and signaling processes with a novel impedimetric biosensor. Biosens Bioelectron. 26: 1407-1413. IF: 5,429

Wartmann T, J Mayerle, T Kähne, M Sahin-Tóth, M Ruthenbürger, R Matthias, A Kruse, T Reinheckel, C Peters, FU Weiss, M Sendler, H Lippert, HU Schulz, A Aghdassi, A Dummer, S Teller, W Halangk, MM Lerch. 2010. Cathepsin L inactivates human trypsionogen. Whereas cathepsin L-deletion reduces the severity of pancreatitis in mice. Gastroenterol. 138: 726-737. IF: 12,899

Wex T, A Leodolter, J Bornschein, D Küster, T Kähne, S Kropf C Albrecht, M Naumann, A Rössner, P Malfertheiner. 2010. Interleukin 1 beta (IL1B) gene polymorphisms are not associated with gastric carcinogenesis in Germany. Anticancer Res. 30: 505-512. IF: 1,428

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